Tools & Scientific Datasets
Manage 236 built-in workspace, memory, and scientific tools plus local reference corpora.
1. Tools (/dashboard/tools)
Dashboard → Tools manages the 236 built-in tools registered in Sandwalk:
- Core Tools (
Core, always on): Essential workspace, file, environment, literature/target lookup, andmemory.*tools (memory.mutate,memory.session_search,memory.wiki_write,memory.graph_record_claim,memory.create_skill, etc.). - Domain Extra Tools (
Extra, opt-in): Specialized tools across 20+ scientific and engineering categories (biomarker,chemistry,clinical,dna,genomics,imaging,literature,network,omics,protein,single_cell,statistics,structure,target). - Filtering & Bulk Actions: Filter by Tier (
All,Core,Extra), Status (Enabled,Disabled), or Category, or scope specific tool allowlists to individual Specialists so everyday chats keep a lean prompt budget.
2. Scientific Datasets (/dashboard/datasets)
Dashboard → Datasets manages local scientific reference corpora stored under ~/.sandwalk/data/ (also accessible via sandwalk data pull-all or /data in the CLI):
| Dataset | Mode | Contents |
|---|---|---|
depmap | Auto-download | DepMap CRISPR gene dependencies, mutations, and cell-line metadata (24Q4, ~550 MB) |
prism | Auto-download | PRISM Repurposing cell-viability screening LFC table (~79 MB) |
msigdb | Auto-download | MSigDB gene set collections: Hallmark, KEGG, Reactome, and GO (~9.5 MB) |
string | Auto-download | Human STRING protein–protein interaction network and confidence scores (~79 MB) |
l1000 | Manual / script | L1000 landmark gene expression signatures (978 genes, ~2.6 GB) |
alphafold | On-demand | AlphaFold predicted protein structures fetched automatically per UniProt ID by structure.alphafold_fetch |
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